Publications
Peptide abundance correlations in metaproteomics enhance taxonomic and functional analysis of the human gut microbiome
npj Biofilms and Microbiomes · 2025
Microbiome-dependent functional responses to structurally distinct oligosaccharides revealed by metaproteomics
npj Biofilms and Microbiomes · 2025
Operational Taxon-Function Framework in MetaX: Unveiling Taxonomic and Functional Associations in Metaproteomics
Analytical Chemistry · 2025
PhyloFunc: phylogeny-informed functional distance as a new ecological metric for metaproteomic data analysis
Microbiome · 2025
Spectral entropy as a measure of the metaproteome complexity
Proteomics · 2024
The Landscape and Perspectives of the Human Gut Metaproteomics
Molecular & Cellular Proteomics · 2024
RapidAIM 2.0: a high-throughput assay to study functional response of human gut microbiome to xenobiotics
Microbiome Research Reports · 2024
An emerging field: Post-translational modification in microbiome
Proteomics · 2023
MetaPep: A core peptide database for faster human gut metaproteomics database searches
Computational and Structural Biotechnology Journal · 2023
Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics
Gut Microbes · 2022
Assessing the Dark Field of Metaproteome
Analytical Chemistry · 2022
Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome
Microbiology Spectrum · 2022
MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening
mSystems · 2022
iMetaLab Suite: A one-stop toolset for metaproteomics
iMeta · 2022
Novel Bioinformatics Strategies Driving Dynamic Metaproteomic Studies
Methods in Molecular Biology · 2022
Metaproteomic sample preparation methods bias the recovery of host and microbial proteins according to taxa and cellular compartment
Journal of Proteomics · 2021
Associations between Cellular Energy and Pediatric Inflammatory Bowel Disease Patient Response to Treatment
Journal of Proteome Research · 2021
Exploring the Microbiome-Wide Lysine Acetylation, Succinylation, and Propionylation in Human Gut Microbiota
Analytical Chemistry · 2021